3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05206

Details:

PFam ID : PF05206

PFam Domain Description : Methyltransferase TRM13

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 141

Average sequence length: 222.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05206	C5LRS1_9ALVE_96_374	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05206	E9BWU5_9EUKA_257_608	100

Sequence based PCA Plot of the family - PF05206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=23 Length=8
Motif3 Start=129 Length=8
Motif4 Start=198 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay