3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05205

Details:

PFam ID : PF05205

PFam Domain Description : COMPASS (Complex proteins associated with Set1p) component shg1

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 77

Average sequence length: 104.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05205	A8PZT6_BRUMA_12_70	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05205	E7R1K6_PICAD_4_120	100

Sequence based PCA Plot of the family - PF05205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay