3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05204

Details:

PFam ID : PF05204

PFam Domain Description : Homing endonuclease

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 88

Average sequence length: 98.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05204	B7R5G0_9EURY_529_615	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05204	Q119D9_TRIEI_1609_1711	100

Sequence based PCA Plot of the family - PF05204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=19 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay