3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05203

Details:

PFam ID : PF05203

PFam Domain Description : Hom_end-associated Hint

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 113

Average sequence length: 272.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05203	A7IX33_PBCVN_439_829	56.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05203	Q874G4_9SACH_272_772	100

Sequence based PCA Plot of the family - PF05203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=414 Length=8
Motif2 Start=305 Length=8
Motif3 Start=6 Length=8
Motif4 Start=424 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay