3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05202

Details:

PFam ID : PF05202

PFam Domain Description : Flp/Fap pilin component

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 9

Average sequence length: 199.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05202	A5LFU8_STRPN_1_85	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05202	FLP_ZYGBI_133_378	100

Sequence based PCA Plot of the family - PF05202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay