3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05201

Details:

PFam ID : PF05201

PFam Domain Description : Glutamyl-tRNAGlu reductase, N-terminal domain

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 868

Average sequence length: 147.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05201	E2LYF9_MONPE_63_125	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05201	E4MKE6_9FIRM_5_209	100

Sequence based PCA Plot of the family - PF05201 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay