3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05199

Details:

PFam ID : PF05199

PFam Domain Description : GMC oxidoreductase

Number of Sequence in 50% Dataset : 335

Number of Sequence in Full Dataset : 3405

Average sequence length: 132.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05199	E2LYF9_MONPE_63_125	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05199	D3AXM0_POLPA_589_658	99.9

Sequence based PCA Plot of the family - PF05199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=185 Length=14
Motif2 Start=1 Length=8
Motif3 Start=165 Length=17
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay