3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05198

Details:

PFam ID : PF05198

PFam Domain Description : Translation initiation factor IF-3, N-terminal domain

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 932

Average sequence length: 69.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05198	D2UYF3_NAEGR_67_144	51.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05198	B1B3P5_9CILI_55_130	100

Sequence based PCA Plot of the family - PF05198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=66 Length=8
Motif2 Start=15 Length=8
Motif3 Start=4 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay