3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05197

Details:

PFam ID : PF05197

PFam Domain Description : TRIC channel

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 62

Average sequence length: 178.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05197	B3S1N7_TRIAD_37_187	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05197	E9CJ17_9EUKA_50_249	98.3

Sequence based PCA Plot of the family - PF05197 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay