3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05195

Details:

PFam ID : PF05195

PFam Domain Description : Aminopeptidase P, N-terminal domain

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 900

Average sequence length: 134.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05195	D7E422_NOSA0_75_130	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05195	E3K4Z4_PUCGT_10_170	100

Sequence based PCA Plot of the family - PF05195 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=41 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay