3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05194

Details:

PFam ID : PF05194

PFam Domain Description : UreE urease accessory protein, C-terminal domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 390

Average sequence length: 96.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05194	D7E422_NOSA0_75_130	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05194	UREE_BIFLS_83_221	100

Sequence based PCA Plot of the family - PF05194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=8
Motif3 Start=62 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay