3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05192

Details:

PFam ID : PF05192

PFam Domain Description : MutS domain III

Number of Sequence in 50% Dataset : 564

Number of Sequence in Full Dataset : 2254

Average sequence length: 291.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05192	F1S564_PIG_215_290	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05192	Q9L4P5_STAAU_11_98	99.7

Sequence based PCA Plot of the family - PF05192 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=75 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay