3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05190

Details:

PFam ID : PF05190

PFam Domain Description : MutS family domain IV

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 1290

Average sequence length: 92.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05190	F1S564_PIG_215_290	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05190	C0EF25_9CLOT_428_482	97.9

Sequence based PCA Plot of the family - PF05190 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=46 Length=8
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay