3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05188

Details:

PFam ID : PF05188

PFam Domain Description : MutS domain II

Number of Sequence in 50% Dataset : 446

Number of Sequence in Full Dataset : 1542

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05188	A0DMV3_PARTE_286_404	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05188	F1L3K0_ASCSU_123_302	99.9

Sequence based PCA Plot of the family - PF05188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=43 Length=8
Motif4 Start=13 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay