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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05187
Details:

PFam ID : PF05187

PFam Domain Description : Electron transfer flavoprotein-ubiquinone oxidoreductase

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 445

Average sequence length: 108.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05187A8PH18_COPC7_573_60775
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05187D8M5S9_BLAHO_393_507100
Sequence based PCA Plot of the family - PF05187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=16 Length=8
Motif3 Start=61 Length=8
Motif4 Start=86 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay