3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05186

Details:

PFam ID : PF05186

PFam Domain Description : Dpy-30 motif

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 286

Average sequence length: 40.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05186	F0WDP3_9STRA_13_51	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05186	A5KB75_PLAVS_828_869	100

Sequence based PCA Plot of the family - PF05186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay