3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05182

Details:

PFam ID : PF05182

PFam Domain Description : FIST N domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 113

Average sequence length: 44.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05182	C5KSC7_9ALVE_217_258	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05182	C5KSC7_9ALVE_217_258	100

Sequence based PCA Plot of the family - PF05182 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=20 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay