3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05180

Details:

PFam ID : PF05180

PFam Domain Description : DNL zinc finger

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 166

Average sequence length: 64.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05180	D8TYC1_VOLCA_70_106	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05180	C5KAG9_9ALVE_57_126	100

Sequence based PCA Plot of the family - PF05180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=14
Motif2 Start=13 Length=8
Motif3 Start=39 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay