3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05178

Details:

PFam ID : PF05178

PFam Domain Description : KRI1-like family

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 139

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05178	E3KML4_PUCGT_36_114	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05178	A4S1Q5_OSTLU_364_525	99.2

Sequence based PCA Plot of the family - PF05178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8
Motif3 Start=49 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay