3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05175

Details:

PFam ID : PF05175

PFam Domain Description : Methyltransferase small domain

Number of Sequence in 50% Dataset : 385

Number of Sequence in Full Dataset : 2503

Average sequence length: 159.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05175	C5KC92_9ALVE_272_374	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05175	E8K4B3_STRPA_19_146	99.9

Sequence based PCA Plot of the family - PF05175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=154 Length=8
Motif2 Start=118 Length=8
Motif3 Start=90 Length=8
Motif4 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay