3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05173

Details:

PFam ID : PF05173

PFam Domain Description : Dihydrodipicolinate reductase, C-terminus

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 1138

Average sequence length: 134.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05173	Q6FJ27_CANGA_162_283	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05173	B3CQD8_ORITI_114_278	100

Sequence based PCA Plot of the family - PF05173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay