3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05172

Details:

PFam ID : PF05172

PFam Domain Description : Nup53/35/40-type RNA recognition motif

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 109

Average sequence length: 93.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05172	Q6FJ27_CANGA_162_283	62.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05172	Q6FJ27_CANGA_162_283	100

Sequence based PCA Plot of the family - PF05172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=11 Length=8
Motif3 Start=27 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay