3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05171

Details:

PFam ID : PF05171

PFam Domain Description : Haemin-degrading HemS.ChuX domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 313

Average sequence length: 129.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05171	A5WFK9_PSYWF_53_185	22.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05171	A5WFK9_PSYWF_53_185	99.6

Sequence based PCA Plot of the family - PF05171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=70 Length=8
Motif3 Start=101 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay