3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05167

Details:

PFam ID : PF05167

PFam Domain Description : Uncharacterised ACR (DUF711)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 321

Average sequence length: 404.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05167	D4DPX5_NEIEG_1_211	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05167	E1E0W9_LACRE_1_159	99.6

Sequence based PCA Plot of the family - PF05167 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=215 Length=8
Motif2 Start=154 Length=8
Motif3 Start=264 Length=14
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay