3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05164

Details:

PFam ID : PF05164

PFam Domain Description : Cell division protein ZapA

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 781

Average sequence length: 102.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05164	B2V585_CLOBA_3_420	57.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05164	E3WQ71_ANODA_93_140	96.4

Sequence based PCA Plot of the family - PF05164 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=27 Length=8
Motif3 Start=50 Length=11
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay