3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05163

Details:

PFam ID : PF05163

PFam Domain Description : DinB family

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 535

Average sequence length: 160.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05163	B6YW47_THEON_14_35	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05163	E9CDU7_9EUKA_1_187	100

Sequence based PCA Plot of the family - PF05163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay