3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05161

Details:

PFam ID : PF05161

PFam Domain Description : MOFRL family

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 421

Average sequence length: 107.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05161	E6ZQV5_9BASI_72_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05161	A9UXS4_MONBE_327_450	100

Sequence based PCA Plot of the family - PF05161 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=14
Motif2 Start=115 Length=8
Motif3 Start=5 Length=8
Motif4 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay