3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05160

Details:

PFam ID : PF05160

PFam Domain Description : DSS1/SEM1 family

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 119

Average sequence length: 61.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05160	E6ZQV5_9BASI_72_110	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05160	E6ZQV5_9BASI_72_110	95.7

Sequence based PCA Plot of the family - PF05160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay