3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05159

Details:

PFam ID : PF05159

PFam Domain Description : Capsule polysaccharide biosynthesis protein

Number of Sequence in 50% Dataset : 205

Number of Sequence in Full Dataset : 613

Average sequence length: 250.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05159	A4HHE3_LEIBR_6_447	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05159	C4XMV7_DESMR_303_461	99.6

Sequence based PCA Plot of the family - PF05159 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=158 Length=14
Motif3 Start=30 Length=8
Motif4 Start=214 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay