3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05157

Details:

PFam ID : PF05157

PFam Domain Description : Type II secretion system (T2SS), protein E, N-terminal domain

Number of Sequence in 50% Dataset : 558

Number of Sequence in Full Dataset : 1337

Average sequence length: 114.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05157	C6NZ21_9GAMM_1_66	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05157	A4EQ64_9RHOB_2_195	100

Sequence based PCA Plot of the family - PF05157 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay