3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05154

Details:

PFam ID : PF05154

PFam Domain Description : TM2 domain

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 927

Average sequence length: 54.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05154	D3BIR3_POLPA_206_258	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05154	B5Y9C7_COPPD_24_114	89

Sequence based PCA Plot of the family - PF05154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=16 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay