3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05153

Details:

PFam ID : PF05153

PFam Domain Description : Family of unknown function (DUF706)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 148

Average sequence length: 224.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05153	D3BIR3_POLPA_206_258	4.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05153	C4JJ08_UNCRE_60_173	99.3

Sequence based PCA Plot of the family - PF05153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=67 Length=8
Motif3 Start=106 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay