3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05150

Details:

PFam ID : PF05150

PFam Domain Description : Legionella pneumophila major outer membrane protein precursor

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 28

Average sequence length: 228.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05150	D1R5J1_9CHLA_84_308	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05150	Q5WUM0_LEGPL_1_325	100

Sequence based PCA Plot of the family - PF05150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=211 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay