3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05148

Details:

PFam ID : PF05148

PFam Domain Description : Hypothetical methyltransferase

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 177

Average sequence length: 195.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05148	Q4P4B2_USTMA_435_491	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05148	E3JUP5_PUCGT_136_386	100

Sequence based PCA Plot of the family - PF05148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=39 Length=8
Motif3 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay