3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05147

Details:

PFam ID : PF05147

PFam Domain Description : Lanthionine synthetase C-like protein

Number of Sequence in 50% Dataset : 384

Number of Sequence in Full Dataset : 601

Average sequence length: 294.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05147	A4FJJ9_SACEN_150_257	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05147	E2A0R7_9HYME_57_145	100

Sequence based PCA Plot of the family - PF05147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=165 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay