3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05142

Details:

PFam ID : PF05142

PFam Domain Description : Domain of unknown function (DUF702)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 88

Average sequence length: 129.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05142	A5BPM2_VITVI_22_113	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05142	D7LUT8_ARALL_34_174	100

Sequence based PCA Plot of the family - PF05142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=20 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay