3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05139

Details:

PFam ID : PF05139

PFam Domain Description : Erythromycin esterase

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 317

Average sequence length: 305.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05139	D3D4X2_9ACTO_141_339	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05139	E5YYM0_9BACL_80_473	100

Sequence based PCA Plot of the family - PF05139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=334 Length=8
Motif4 Start=196 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay