3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05134

Details:

PFam ID : PF05134

PFam Domain Description : Type II secretion system (T2SS), protein L

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 283

Average sequence length: 223.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05134	A6BCD1_VIBPA_1_112	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05134	E1V5F6_HALED_23_225	100

Sequence based PCA Plot of the family - PF05134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=43 Length=8
Motif3 Start=31 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay