3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05129

Details:

PFam ID : PF05129

PFam Domain Description : Transcription elongation factor Elf1 like

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 153

Average sequence length: 78.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05129	C5L3B8_9ALVE_1_42	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05129	E0ST21_IGNAA_2_95	100

Sequence based PCA Plot of the family - PF05129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=50 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay