3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05127

Details:

PFam ID : PF05127

PFam Domain Description : Helicase

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 346

Average sequence length: 169.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05127	EX5A_BUCAP_171_372	82

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05127	C6LTE9_GIAIB_379_583	100

Sequence based PCA Plot of the family - PF05127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay