3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05121

Details:

PFam ID : PF05121

PFam Domain Description : Gas vesicle protein K

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 89

Average sequence length: 85.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05121	D8LP70_ECTSI_29_186	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05121	Q0RLD7_FRAAA_1_70	98.8

Sequence based PCA Plot of the family - PF05121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay