3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05120

Details:

PFam ID : PF05120

PFam Domain Description : Gas vesicle protein G

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 81

Average sequence length: 74.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05120	D8LP70_ECTSI_29_186	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05120	A5D583_PELTS_4_86	100

Sequence based PCA Plot of the family - PF05120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay