3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05117

Details:

PFam ID : PF05117

PFam Domain Description : Family of unknown function (DUF695)

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 84

Average sequence length: 128.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05117	A4BFC1_9GAMM_20_151	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05117	D6GRL6_FILAD_8_147	100

Sequence based PCA Plot of the family - PF05117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=86 Length=8
Motif3 Start=47 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay