3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05115

Details:

PFam ID : PF05115

PFam Domain Description : Cytochrome B6-F complex subunit VI (PetL)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 89

Average sequence length: 30.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05115	C4RKC2_9ACTO_1_138	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05115	C0JWT4_9CHLO_1_31	98.8

Sequence based PCA Plot of the family - PF05115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay