3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05112

Details:

PFam ID : PF05112

PFam Domain Description : Baculovirus P47 protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 41

Average sequence length: 297.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05112	B8Q8I5_GVCP_74_152	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05112	D4N281_9ABAC_1_312	100

Sequence based PCA Plot of the family - PF05112 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=11 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay