3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05109

Details:

PFam ID : PF05109

PFam Domain Description : Herpes virus major outer envelope glycoprotein (BLLF1)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 5

Average sequence length: 544.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05109	E2GKX3_EBVG_1_886	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05109	E2GKX3_EBVG_1_886	100

Sequence based PCA Plot of the family - PF05109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=699 Length=8
Motif4 Start=826 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay