3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05107

Details:

PFam ID : PF05107

PFam Domain Description : Family of unknown function (DUF694)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 301

Average sequence length: 268.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05107	Q1Q0Z6_9BACT_18_307	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05107	A7BQN5_9GAMM_4_314	100

Sequence based PCA Plot of the family - PF05107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=132 Length=8
Motif3 Start=205 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay