3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05105

Details:

PFam ID : PF05105

PFam Domain Description : Holin family

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 314

Average sequence length: 116.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05105	C9LPB7_9FIRM_113_210	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05105	E2N5U7_CAPSP_24_169	100

Sequence based PCA Plot of the family - PF05105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=96 Length=8
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay