3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05103

Details:

PFam ID : PF05103

PFam Domain Description : DivIVA protein

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 667

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05103	D6PGG5_9VIRU_93_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05103	A0LTP0_ACIC1_3_164	100

Sequence based PCA Plot of the family - PF05103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=65 Length=8
Motif3 Start=16 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay