3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05101

Details:

PFam ID : PF05101

PFam Domain Description : Type IV secretory pathway, VirB3-like protein

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 369

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05101	D6PGG5_9VIRU_93_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05101	A8PK76_9COXI_1_88	100

Sequence based PCA Plot of the family - PF05101 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay